Released Software

What you can do with Mass++?  See overview of the software.

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Click above to see overview of Mass++.
※See “How to play” at “1.Video Tutorial” on Tutorial page, if necessary.

How is Mass++ multiple vendor support?  See input / output support

*What is Mass++(Ver.2)?
It is software for proteomics and metabolomics analysis to solve or compensate for the problems of conventional software supplied with mass spectroscopes. It has the following capabilities.
(1) Support for reading/writing various kinds of instrument data from multiple vendors => Input / output support
(2) Functionality and operability for life sciences => Primary functionality
(3) Expandability for users’ original functionality => Plug-in structure

It also works together with MassBank, and includes functionality that uses its database.

We have periodically given presentations about our development results at conferences.
・6^th AOHUPO(Beijin, China, 2012)— The peak detection algorithm “MWD”[723KB]
・10^th JHUPO(Tokyo, Japan, 2012)— The database search method for MSⁿ[397KB]
・19^th IMSC(Kyoto, Japan, 2012)— Development of functional extensions[865KB]
・37^th JSBMS(Nagoya, Japan, 2012)— The role of Mass++ as a platform[1,299KB]
・59^th Annual Conference on Mass Spectrometry(Osaka, Japan, 2011)[616KB]
・59^th ASMS Conference on Mass Spectrometry and Allied Topics(Denver, Colorado, USA, 2011)[1,631KB]

*Software download
Mass++(Ver.2) is still being developed now. To help us achieve our aim of getting new requests and suggestions from a large amount of users, we will provide Mass++(Ver.2) freely. Please join us and send us any requests or suggestions you have.
=> Mass++ V2.5.0 download (Updated on Jun. 10, 2013 ReleaseNotes)
=> Tutorial (Updated on Sep. 14, 2012)
=> Sample program (Updated on Sep. 14, 2012)

*Requirements, suggestions, questions
=> Feedback form (Questions and answers are private.)
=> FAQ: Frequently asked questions
=> Google Group page (All questions and answers are publically visible. ※Please see the site information for usage notes etc.)

*What is ProteoAnalysis?
ProteoAnalysis is a web application for the proteome analysis. Users can search protein databases and perform related jobs only by uploading data and choosing the item from the menu, without any installation onto PCs.
These three points are the main characteristics at this time:

(1) Producing peak lists based on the raw data obtained from the mass spectrometer.

(2) Perform MS spectra search against protein sequence databases, with X!Tandem, a free search engine.

(3) Generate hyperlinks to the PubMed entries of the academic papers that reported post-translational modifications, which are included in the search results.

*Link to the main site of ProteoAnalysis
⇒　ProteoAnalysis top page (Updated at Sep. 18, 2012 )　
See the public release policy as described in the top page.